Mentre Tokyo è ormai ridotta ad un cumulo di macerie, Steve Martin, giornalista americano del United World News, racconta di come la città è stata attaccata da una mostruosa creatura. Il racconto poi torna al presente e segue le operazioni che conducono alla distruzione di Godzilla, sconfitto grazie all'intervento del professor Serizawa, vecchio amico di Steve.

Mining engineer Shigeru investigates the disappearance and death of his fellow coworkers when prehistoric nymphs are discovered emerging from the mines. After an attack on the local village, Shigeru heads deeper into the mines only to make a more horrifying discovery in the form a prehistoric flying creature. Soon a second monster appears as the two converge in Fukuoka.

Three competing parties all race against time to track down an elusive creature known only as the Snowman.

Two fishing scout pilots make a horrifying discovery when they encounter a second Godzilla alongside a new monster named Anguirus. Without the weapon that killed the original, authorities attempt to lure Godzilla away from the mainland. But Anguirus soon arrives and the two monsters make their way towards Osaka as Japan braces for tragedy.

Ford Brody, a Navy bomb expert, has just reunited with his family in San Francisco when he is forced to go to Japan to help his estranged father, Joe. Soon, both men are swept up in an escalating crisis when an ancient alpha predator arises from the sea to combat malevolent adversaries that threaten the survival of humanity. The creatures leave colossal destruction in their wake, as they make their way toward their final battleground: San Francisco.

Japan is thrown into a panic after several ships are sunk near Odo Island. An expedition to the island led by Dr. Yemani soon discover something far more devastating than imagined in the form of a 50 meter tall monster whom the natives call Gojira. Now the monster begins a rampage that threatens to destroy not only Japan, but the rest of the world as well.